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 | Acesso ao texto completo restrito à biblioteca da Embrapa Arroz e Feijão. Para informações adicionais entre em contato com cnpaf.biblioteca@embrapa.br. |
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Registro Completo |
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Biblioteca(s): |
Embrapa Arroz e Feijão. |
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Data corrente: |
07/11/2022 |
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Data da última atualização: |
07/11/2022 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
MATOS, M. K. da S.; BENKO-ISEPPON, A. M.; BEZERRA-NETO, J. P.; FERREIRA-NETO, J. R. C.; WANG, Y.; LIU, H.; PANDOLFI, V.; AMORIM, L. L. B.; WILLADINO, L.; AMORIM, T. C. do V.; KIDO, E. A.; VIANELLO, R. P.; TIMKO, M. P.; BRASILEIRO-VIDAL, A. C. |
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Afiliação: |
MITALLE KAREN DA SILVA MATOS, UNIVERSIDADE FEDERAL DE PERNAMBUCO; ANA MARIA BENKO-ISEPPON, UNIVERSIDADE FEDERAL DE PERNAMBUCO; JOAO PACIFICO BEZERRA-NETO, UNIVERSIDADE FEDERAL DE PERNAMBUCO; JOSE RIBAMAR COSTA FERREIRA-NETO, UNIVERSIDADE FEDERAL DE PERNAMBUCO; YU WANG, UNIVERSITY OF VIRGINA; HAI LIU, UNIVERSITY OF VIRGINIA; VALESCA PANDOLFI, UNIVERSIDADE FEDERAL DE PERNAMBUCO; LIDIANE LINDINALVA BARBOSA AMORIM, UNIVERSIDADE FEDERAL DE PERNAMBUCO; LILIA WILLADINO, UNIVERSIDADE FEDERAL DE PERNAMBUCO; THIALISSON CAACI DO VALE AMORIM, UNIVERSIDADE FEDERAL DE PERNAMBUCO; EDERSON AKIO KIDO, UNIVERSIDADE FEDERAL DE PERNAMBUCO; ROSANA PEREIRA VIANELLO, CNPAF; MICHAEL P. TIMKO, UNIVERSITY OF VIRGINIA; ANA CHRISTINA BRASILEIRO-VIDAL, UNIVERSIDADE FEDERAL DE PERNAMBUCO. |
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Título: |
The WRKY transcription factor family in cowpea: Genomic characterization and transcriptomic profiling under root dehydration. |
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Ano de publicação: |
2022 |
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Fonte/Imprenta: |
Gene, v. 823, 146377, May 2022. |
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ISSN: |
0378-1119 |
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DOI: |
https://doi.org/10.1016/j.gene.2022.146377 |
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Idioma: |
Inglês |
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Conteúdo: |
Cowpea [Vigna unguiculata (L.) Walp.] is one of the most tolerant legume crops to drought and salt stresses. WRKY transcription factor (TF) family members stand out among plant transcriptional regulators related to abiotic stress tolerance. However, little information is currently available on the expression of the cowpea WRKY gene family (VuWRKY) in response to water deficit. Thus, we analyzed genomic and transcriptomic data from cowpea to identify VuWRKY members and characterize their structure and transcriptional response under root dehydration stress. Ninety-two complete VuWRKY genes were found in the cowpea genome based on their domain characteristics. They were clustered into three groups: I (15 members), II (58), and III (16), while three genes were unclassified. Domain analysis of the encoded proteins identified four major variants of the conserved heptapeptide motif WRKYGQK. In silico analysis of VuWRKY gene promoters identified eight candidate binding motifs of cis-regulatory elements, regulated mainly by six TF families associated with abiotic stress responses. Ninety-seven VuWRKY modulated splicing variants associated with 55 VuWRKY genes were identified via RNA-Seq analysis available at the Cowpea Genomics Consortium (CpGC) database. qPCR analyses showed that 22 genes are induced under root dehydration, with VuWRKY18, 21, and 75 exhibiting the most significant induction levels. Given their central role in activating signal transduction cascades in abiotic stress response, the data provide a foundation for the targeted modification of specific VuWRKY family members to improve drought tolerance in this important climate-resilient legume in the developing world and beyond. MenosCowpea [Vigna unguiculata (L.) Walp.] is one of the most tolerant legume crops to drought and salt stresses. WRKY transcription factor (TF) family members stand out among plant transcriptional regulators related to abiotic stress tolerance. However, little information is currently available on the expression of the cowpea WRKY gene family (VuWRKY) in response to water deficit. Thus, we analyzed genomic and transcriptomic data from cowpea to identify VuWRKY members and characterize their structure and transcriptional response under root dehydration stress. Ninety-two complete VuWRKY genes were found in the cowpea genome based on their domain characteristics. They were clustered into three groups: I (15 members), II (58), and III (16), while three genes were unclassified. Domain analysis of the encoded proteins identified four major variants of the conserved heptapeptide motif WRKYGQK. In silico analysis of VuWRKY gene promoters identified eight candidate binding motifs of cis-regulatory elements, regulated mainly by six TF families associated with abiotic stress responses. Ninety-seven VuWRKY modulated splicing variants associated with 55 VuWRKY genes were identified via RNA-Seq analysis available at the Cowpea Genomics Consortium (CpGC) database. qPCR analyses showed that 22 genes are induced under root dehydration, with VuWRKY18, 21, and 75 exhibiting the most significant induction levels. Given their central role in activating signal transduction cascades in abiotic stress... Mostrar Tudo |
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Palavras-Chave: |
QPCR; RNA-Seq. |
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Thesagro: |
Seca; Vigna Unguiculata. |
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Thesaurus Nal: |
Abiotic stress; Cowpeas; Drought tolerance; Gene expression. |
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Categoria do assunto: |
X Pesquisa, Tecnologia e Engenharia |
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Marc: |
LEADER 02849naa a2200397 a 4500
001 2148067
005 2022-11-07
008 2022 bl uuuu u00u1 u #d
022 $a0378-1119
024 7 $ahttps://doi.org/10.1016/j.gene.2022.146377$2DOI
100 1 $aMATOS, M. K. da S.
245 $aThe WRKY transcription factor family in cowpea$bGenomic characterization and transcriptomic profiling under root dehydration.$h[electronic resource]
260 $c2022
520 $aCowpea [Vigna unguiculata (L.) Walp.] is one of the most tolerant legume crops to drought and salt stresses. WRKY transcription factor (TF) family members stand out among plant transcriptional regulators related to abiotic stress tolerance. However, little information is currently available on the expression of the cowpea WRKY gene family (VuWRKY) in response to water deficit. Thus, we analyzed genomic and transcriptomic data from cowpea to identify VuWRKY members and characterize their structure and transcriptional response under root dehydration stress. Ninety-two complete VuWRKY genes were found in the cowpea genome based on their domain characteristics. They were clustered into three groups: I (15 members), II (58), and III (16), while three genes were unclassified. Domain analysis of the encoded proteins identified four major variants of the conserved heptapeptide motif WRKYGQK. In silico analysis of VuWRKY gene promoters identified eight candidate binding motifs of cis-regulatory elements, regulated mainly by six TF families associated with abiotic stress responses. Ninety-seven VuWRKY modulated splicing variants associated with 55 VuWRKY genes were identified via RNA-Seq analysis available at the Cowpea Genomics Consortium (CpGC) database. qPCR analyses showed that 22 genes are induced under root dehydration, with VuWRKY18, 21, and 75 exhibiting the most significant induction levels. Given their central role in activating signal transduction cascades in abiotic stress response, the data provide a foundation for the targeted modification of specific VuWRKY family members to improve drought tolerance in this important climate-resilient legume in the developing world and beyond.
650 $aAbiotic stress
650 $aCowpeas
650 $aDrought tolerance
650 $aGene expression
650 $aSeca
650 $aVigna Unguiculata
653 $aQPCR
653 $aRNA-Seq
700 1 $aBENKO-ISEPPON, A. M.
700 1 $aBEZERRA-NETO, J. P.
700 1 $aFERREIRA-NETO, J. R. C.
700 1 $aWANG, Y.
700 1 $aLIU, H.
700 1 $aPANDOLFI, V.
700 1 $aAMORIM, L. L. B.
700 1 $aWILLADINO, L.
700 1 $aAMORIM, T. C. do V.
700 1 $aKIDO, E. A.
700 1 $aVIANELLO, R. P.
700 1 $aTIMKO, M. P.
700 1 $aBRASILEIRO-VIDAL, A. C.
773 $tGene$gv. 823, 146377, May 2022.
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Embrapa Arroz e Feijão (CNPAF) |
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| Registros recuperados : 6 | |
| 1. |  | GRATTAPAGLIA, D.; CHAPARRO, J. X.; WILCOX, P.; KUHLMAN, G.; PLOMION, C.; CRANE, B.; S. McCORD, B-H; LIU, H.; AMERSON, H.; MCKEAND, S.; O'MALLEY, D. Molecular markers and tree breeding: R. Sederoff. In: ENCUENTRO LATINO AMERICANO DE BIOTECNOLOGIA VEGETAL, 2., 1995, Puerto Iguazu, Argentina. REDBIO95. [s.l.:s.n.], 1995. n.CP-7.| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 2. | | OKE, M.; CHING, R. T. Y.; CARTER, L. G.; JOHNSON, K. A.; LIU, H.; MCMAHON, S. A.; WHITE, M. F.; BLOCH JÚNIOR, C.; BOTTING, C. H.; WALSH, M. A.; LATIFF, A. A.; KENNEDY, M. W.; COOPER, A.; NAISMITH, J. H. Unusual chromophore and cross-links in ranasmurfin: a blue protein from the foam nests of a tropical frog. Angewandte Chemie International Edition, v. 47, p. 7853-7856, 2008.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: Internacional - A |
| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 3. | | SIMON, M. F.; MENDOZA, J. M. F.; LIU, H.-L.; MARTINS, M. L. L.; DROVETSKI, S. V.; PRZELOMSKA, N. A. S.; LOISELLE, H.; CAVALCANTI, T. B.; INGLIS, P. W.; MUELLER, N. G.; ALLABY, R. G.; FREITAS, F. O.; KISTLER, L. Phylogenomic analysis points to a South American origin of Manihot and illuminates the primary gene pool of cassava. New Phytologist, v. 233, n. 1, p. 534-545, 2022. Na publicação: Fábio de Oliveira Freitas.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 4. | | MCMAHON, S. A.; WALSH, M. A.; CHING R. T. Y.; CARTER, L. G.; DORWARD, M.; JOHNSON, K. A.; LIU, H.; OKE, M.; BLOCH JUNIOR, C.; KENNEDY, M. W.; LATIFF, A. A.; COOPER, A.; TAYLOR, G. L.; WHITE, M. F.; NAISMITH, J. H. Crystallization of Ranasmurfin, a blue-coloured protein from Plypedates leucomystax. Acta Crystallographica. Section F, v. 62, p. 1124-1126, 2006.| Tipo: Artigo em Anais de Congresso / Nota Técnica |
| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 5. | | MATOS, M. K. da S.; BENKO-ISEPPON, A. M.; BEZERRA-NETO, J. P.; FERREIRA-NETO, J. R. C.; WANG, Y.; LIU, H.; PANDOLFI, V.; AMORIM, L. L. B.; WILLADINO, L.; AMORIM, T. C. do V.; KIDO, E. A.; VIANELLO, R. P.; TIMKO, M. P.; BRASILEIRO-VIDAL, A. C. The WRKY transcription factor family in cowpea: Genomic characterization and transcriptomic profiling under root dehydration. Gene, v. 823, 146377, May 2022.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 2 |
| Biblioteca(s): Embrapa Arroz e Feijão. |
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| 6. | | KUHN, J.; ADKINS, S.; AGWANDA, B. R.; KUBRUSLI, R. A.; ALKHOVSKY, S. V.; AMARASINGHE, G. K.; TATJANA, A.-Z.; AYLLÓN, M. A.; BAHL, J.; BALKEMA BUSCHMANN, A.; BALLINGER, M. J.; BASLER, C. F.; BAVARI, S.; BEER, M.; BEJERMAN, N.; BENNETT, A. J.; DBENTE, D. A.; BERGERON, É.; BIRD, B. H.; BLAIR, C. D.; BLASDELL, K. R.; BLYSTAD, D. R.; BOJKO, J.; BORTH, W. B.; BRADFUTE, S.; BREYTA, R.; BRIESE, T.; BROWN, P. A.; BROWN, J. K.; BUCHHOLZ, U. J.; BUCHMEIER, M. J.; ABUKREYEV, A.; BURT, F.; BÜTTNER, C.; CALISHER, C. H.; CAO, M.; CASAS, I.; CHANDRAN, K.; CHARREL, R. N.; CHENG, Q.; CHIAKI, Y.; CHIAPELLO, M.; CHOI, I. R.; CIUFO, M.; CLEGG, J. C. S.; CROZIER, I.; BÓ, E. D.; DE LA TORRE, J. C.; LAMBALLERIE, X. de; SWART, R. L. de; DEBAT, H.; DHEILLY, N. M.; DI CICCO, E.; DI PAOLA, N.; DI SERIO, F.; DIETZGEN, R. G.; DIGIARO, M.; DOLNIK, O.; DREBOT, M. A.; DREXLER, J. F.; DUNDON, W. G.; DUPREX, W. P.; DÜRRWALD, R.; DYE, J. M.; EASTON, A. J.; EBIHARA, H.; ELBEAINO, T.; ERGÜNAY, K.; FERGUSON, H. W.; FOOKS, A. R.; FORGIA, M.; FORMENTY, P. B. H.; FRÁNOVÁ, J.; ASTUA, J. de F.; FU, J.; FÜRL, S.; ZACHERT, S. G.; GĀO, G. F.; GARCÍA, M. L.; SASTRE, A. G.; GARRISON, A. R.; GASKIN, T.; GONZALE, J. P. J.; GRIFTHS, A.; GOLDBERG, T. L.; GROSCHUP, M. H.; GÜNTHER, S.; HALL, R. A.; HAMMOND, J.; HAN, O.; HEPOJOKI, J.; HEWSON, R.; HONG, J.; HONG, N.; HORIE, M.; HU, J. S.; HU, T.; HUGHES, H. R.; HÜTTNER, F.; HYNDMAN, T. H.; ILYAS, M.; JALKANEN, R.; JIĀNG, D.; JONSON, G. J.; JUNGLEN, S.; KADONO, F.; KAUKINEN, K. H.; KAWATE, M.; KLEMPA, B.; KLINGSTRÖM, J.; KOBINGER, G.; KOLONIUK, I.; KONDŌ, H.; KOONIN, V.; KRUPOVIC, M.; KUBOTA, K.; KURATH, G.; LAENEN, L.; LAMBERT, A. J.; LANGEVIN, S. L.; LEE, B.; LEFKOWITZ, E. J.; LI, L.; LEROY, E. M.; LI, S.; LÍ, J.; LIU, H.; LUKASHEVICH, I. S.; MAES, P.; SOUZA, W. M. de; MARKLEWITZ, M.; MARSHALL, S. H.; MARZANO, S. L.; MASSART, S.; MCCAULEY, J. W.; MELZER, M.; MILLER, K. M.; MING, T. J.; MIRAZIMI, A.; MORDECAI, G. J.; MÜHLBACH, H. P.; MÜHLBERGER, E.; NAIDU, R.; NATSUAKI, T.; NAVARRO, J. A.; NETESOV, S. Y V.; NEUMANN, G.; NOWOTNY, N.; NUNES, M. R. T.; VELARDE, A. O.; PALACIOS, G.; PALLÁS, V.; PÁLYI, B.; PAPA, A.; PARASKEVOPOULOU, S.; PARK, A. C.; PARRISH, C. R.; PATTERSON, D. A.; CORRÊA, A. P.; PAWESKA, J. T.; PAYNE, S.; PERACCHIO, C.; PÉREZ, D. R.; POSTLER, T. S.; QI, L.; RADOSHITZKY, S. R.; RESENDE, R. O.; REYES, C. A.; RIMA, B. K.; LUNA, G. R.; ROMANOWSKI, V.; ROTA, P.; RUBBENSTROTH, D.; RUBINO, L.; RUNSTADLER, J. A.; SABANADZOVIC, S.; SALL, A. A.; SALVATO, M. S.; SANG, R.; SASAYA, T.; SCHULZE, A. D.; SCHWEMMLE, M.; SHI, M.; SHÍ, X.; SHIMOMOTO, Y.; SHIRAKO, Y.; SIDDELL, S. G.; SIMMONDS, P.; SIRONI, M.; SMAGGHE, G.; SMITHER, S.; SONG, J. W.; SPANN, K.; SPENGLER, J. R.; STENGLEIN, M. D.; STONE, D. M.; SUGANO, J.; TABATA, A.; TAKADA, A.; TAKEUCHI, S.; TCHOUASSI, D. P.; TEFER, A.; TESH, R. B.; THORNBURG, N. J.; TOMITAKA, Y.; TOMONAGA, K.; TORDO, N.; TORTO, B.; TOWNER, J. S.; TSUDA, S.; TU, C.; TURINA, M.; TZANETAKIS, I. E.; UCHIDA, J.; USUGI, T.; VAIRA, A. M.; VALLINO, M.; VAN DEN HOOGEN, B.; VARSANI, A.; VASILAKIS, N.; VERBEEK, M.; BARGEN, S. V.; WADA, J.; WAHL, V.; WALKER, P. J.; WANG, L. F.; WANG, G.; WANG, Y.; WANG, Y.; WAQAS, M.; WÈI, T.; WEN, S.; WHITFELD, A. E.; WILLIAMS, J. V.; WOLF, Y. I.; WU, J.; XU, L.; YANAGISAWA, H.; YANG, C.; YANG, Z.; ZERBINI, F. M.; ZHAI, L.; ZHANG, Y. Z.; ZHANG, O.; ZHANG, J.; ZHANG, Z.; ZHOU, X. 2021 Taxonomic update of phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirale. Archives of Virology, August, 2021.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 2 |
| Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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| Registros recuperados : 6 | |
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